Well look at it this way.
The huge torque factor coming from engines produced by Harley-Davidson, Boss Hoss, old American muscle and powerful Pickups are long-stroking, big bore engines. That's not just a phrase you can use to turn on your lady. (It works though, trust me

) These engines have got pistons the size of garbage cans and huge, long connecting rods. Off the line, a Boss Hoss will ALWAYS beat a GSX-R, but in a quarter mile drag, the sportbike will take the race 10 times out of 10. The American engines put high torque at the back wheel while the Japanese... don't.
Take a look at the GSX-R 1000. In the 09-10 model, the cylinder has got an oversquare 2.93 inch (74.5 mm) wide cylinder and a 2.26 inch (57.3 mm) stroke. This gives it a relatively low torque factor at high RPMs (80 ftยทlb (110 Nยทm) at 8,000 rpm).
Now compare to a V8 Boss Hoss. The 502 ci engine belts out 567 ft/lbs @ 4200RPM. The garbage can sized cylinders have a whopping 4.470 inch bore and a 4.000 inch stroke. As you can see, the Stroke Ratio (Bore/Stroke) is 1.1175. FAR closer to square (1.00) than the 1.296 ratio of the GSX-R.
Another slightly more applicable example would be the 88 ci Harley-Davidson Twin-Cam engine. It has got a 3.75 inch bore with a 4 inch stroke. The Evo engine is actually under-square! (.9375)
(one more, I promise)
Compare this to the smaller H-D Revolution engine used in the VSRC V-Rod. This has a 3.94 inch bore and a 2.83 inch stroke. A massive shift by Harley-Davidson from its under-square Evo's to a 1.39 Stroke Ratio! This allows the engine to rev up to 9,000 RPM's with a respectable 74 ft. lbs. of torque @ 7000 rpm.
Moral of the story: You want low-end torque? Get big pistons and big crankshafts, and keep their measurements as close to equal (square) as possible. If you're modifying an engine, increase your stroke length, and you can bring down your stroke ratio dramatically.
(If ya'll don't understand the 'square's and 'undersquares' then go HERE:
http://en.wikipedia.org/wiki/Stroke_ratio)