The charging system consists of a stator, a magnetic rotor or wound rotor for the field, a regulator and rectifier, some Honda's use a wound rotor , same as car alternator, meaning it must be supplied with some power to be excited, doing same as rotor with permanent magnets, then a.c. must be changed to D.C. to be able to charge battery. reg/rec. must be checked. I had it go in my Sporty, either it won't charge or it will over charge. If bike has a wound rotor, try to apply power to the brushes, then check output. R U confused? then call me at 727-204-2767 I will be VERY glad to help u.
See if u can get a tail-lite bulb with socket an wires, place in series or between bat and system wiring with ign. sw. off if bulb lights to some extent, it will give you an idea of current drawn, low fil. is .59 amps would be a tail lamp, Hi. fil. is 2.10 amps this would be a stop light. I am not familiar with that bike but if it has a lot of accessories, that might be the reason battery is maybe not dead but not enough to crank over either.